Changelog

Source: NEWS.md

PROMISE.data 0.6.2

Fixes

  • spread_over_visits() function had a bug which added data to other participants. Fixed.

Updates

  • Added newer data from the database for form014, form012e, and form015e that previously had the corrupted data.
  • Add the latest visit information data. Created a new file in data-raw/ for it called all-subjects-visit-dates-2023.csv since the original one had more information than this newest one (since the original was also used for CANOE participant management).
  • Regenerated the website.

PROMISE.data 0.6.1

Additions

  • Added the BCFA data into the PROMISE dataset.

Bug fixes

  • A recent update of data-raw/all-db-form015e.csv had been corrupted by conversion from Excel (dates were mangled). Reverted the older (correct) version.
  • Date variable in DXA was actually a datatime type, so needed to fix it to import only the date.

Updates

  • Regenerate the website.

PROMISE.data 0.6.0

Updates

  • Added year 12 (VN) to the options list.
  • Added arguments to the add_visit_count() function after updating it in PROMISE.scrub.

Bug fixes

  • assertr was archived, so needed to switch to checkmate
  • Small fixes to full_join() after updates that added the relationship argument.
  • Replaced functions that became deprecated, like tbl_df() and mutate_at().

PROMISE.data 0.5.1

  • Forgot to update the main PROMISE dataset.

Fixes

  • There were duplicates in the data-raw/msd/cleaned/adipo.csv data, which were removed.
  • Both data-raw/msd/cleaned/adipo.csv and data-raw/msd/cleaned/tnfa.csv had cells with #VALUE! in there, not sure why. Removed so they are empty (missing).
  • Forgot to fix duplicates in form015e.

PROMISE.data 0.5.0

Additions

  • Added all the MSD measured data (in data-raw/msd/cleaned/). It was cleaned outside of this package.
  • Added the year 9 HOMA2 data.
  • Added the year 9 physical activity data.
  • Added other year 9 data.

Fixes

  • Minor fixes to some code to update it to current versions.

PROMISE.data 0.4.0

Additions

  • Some of year 9 data has been added!!

PROMISE.data 0.3.0

Additions and new features

  • Added a master list of participants and visit dates (#92, #19)
  • Changed VN == 1 to VN == 0
  • Removed visit_dates() in place of visit_info()

Fixes

  • Many fixes to SID and VN, so sample size may increase (#96, #19)
  • Added specific tags to the PROMISE companion packages in the DESCRIPTION Imports
  • Updated the installation instructions (the previous code didn’t work)

PROMISE.data 0.2.3

  • Changed package name to be PROMISE.data (there was a package called PROMISE in Bioconductor)

Additions and new features

  • Simplifed CONTRIBUTING.md documentation (also, resolved #62, #58, #50, )
  • Added an audit check on the data, with vignette (#27)
  • Simplified README (#70), especially the installation instructions (#51, #54)
  • Added methods vignette
  • Added infrastructure to create a website and created it
  • Kept several columns from being dropped (via renaming yaml files)
  • Saved all individual datasets as Rda files to be accessible via PROMISE.data::
  • Created a vignette of these datasets
  • Shortened down the main PROMISE.data::PROMISE dataset to (what I believe) are some of the core data
  • Created an export function to save a file as csv to import into other programs
  • Included the combine_datasets function from PROMISE.scrub to merge any of the datasets together (related #80)

Fixes

  • Updated data dictionary (#56, #53)
  • Minor bug fixes and clean up of functions (#)
  • Started assigning discrete values to numerical values (#59)